<86>Jan 26 08:44:54 userdel[10574]: delete user 'rooter' <86>Jan 26 08:44:54 userdel[10574]: removed group 'rooter' owned by 'rooter' <86>Jan 26 08:44:54 userdel[10574]: removed shadow group 'rooter' owned by 'rooter' <86>Jan 26 08:44:54 groupadd[10591]: group added to /etc/group: name=rooter, GID=564 <86>Jan 26 08:44:54 groupadd[10591]: group added to /etc/gshadow: name=rooter <86>Jan 26 08:44:54 groupadd[10591]: new group: name=rooter, GID=564 <86>Jan 26 08:44:54 useradd[10599]: new user: name=rooter, UID=564, GID=564, home=/root, shell=/bin/bash <86>Jan 26 08:44:54 userdel[10611]: delete user 'builder' <86>Jan 26 08:44:54 userdel[10611]: removed group 'builder' owned by 'builder' <86>Jan 26 08:44:54 userdel[10611]: removed shadow group 'builder' owned by 'builder' <86>Jan 26 08:44:54 groupadd[10624]: group added to /etc/group: name=builder, GID=565 <86>Jan 26 08:44:54 groupadd[10624]: group added to /etc/gshadow: name=builder <86>Jan 26 08:44:54 groupadd[10624]: new group: name=builder, GID=565 <86>Jan 26 08:44:54 useradd[10632]: new user: name=builder, UID=565, GID=565, home=/usr/src, shell=/bin/bash <13>Jan 26 08:44:59 rpmi: libibverbs-1.1.8-alt1 1423045780 installed <13>Jan 26 08:44:59 rpmi: librdmacm-1.0.19.1-alt2 1423057440 installed <13>Jan 26 08:44:59 rpmi: libdapl-1.2.16-alt2 1297310493 installed <13>Jan 26 08:44:59 rpmi: libquadmath0-6.3.1-alt1 1484277945 installed <13>Jan 26 08:44:59 rpmi: libgfortran3-6.3.1-alt1 1484277945 installed <13>Jan 26 08:44:59 rpmi: libquadmath6-devel-6.3.1-alt1 1484277945 installed <13>Jan 26 08:44:59 rpmi: torque-4.2.1-alt1 1362870992 installed <13>Jan 26 08:44:59 rpmi: libtorque-4.2.1-alt1 1362870992 installed <13>Jan 26 08:44:59 rpmi: libnuma-2.0.11-alt1 1450022594 installed <13>Jan 26 08:44:59 rpmi: libibumad-1.3.6-alt2 1297311906 installed <13>Jan 26 08:44:59 rpmi: libibcommon-1.2.0-alt2 1297310561 installed <13>Jan 26 08:44:59 rpmi: libibcommon-devel-1.2.0-alt2 1297310561 installed <13>Jan 26 08:44:59 rpmi: libibumad-devel-1.3.6-alt2 1297311906 installed <13>Jan 26 08:44:59 rpmi: tcsh-6.18.01-alt2.qa1 1479380728 installed <13>Jan 26 08:44:59 rpmi: rpm-macros-mpi-selector-1.0.3-alt2 1289984589 installed <13>Jan 26 08:44:59 rpmi: mpi-selector-1.0.3-alt2 1289984589 installed <13>Jan 26 08:44:59 rpmi: openmpi-compat-1.6.4-alt3 1482880775 installed <13>Jan 26 08:44:59 rpmi: openmpi-lib-compat-1.6.4-alt3 1482880775 installed <13>Jan 26 08:44:59 rpmi: libfftw3-mpi-1:3.3.4-alt1.1 1449202259 installed <13>Jan 26 08:44:59 rpmi: libpfft-1.0.7-alt1.alpha 1374202619 installed <13>Jan 26 08:44:59 rpmi: libsysfs-2.1.0-alt8 1435686568 installed <13>Jan 26 08:44:59 rpmi: libsysfs-devel-2.1.0-alt8 1435686568 installed <13>Jan 26 08:44:59 rpmi: libibverbs-devel-1.1.8-alt1 1423045780 installed <13>Jan 26 08:44:59 rpmi: librdmacm-devel-1.0.19.1-alt2 1423057440 installed <13>Jan 26 08:44:59 rpmi: libdapl-devel-1.2.16-alt2 1297310493 installed <13>Jan 26 08:44:59 rpmi: gcc-fortran-common-1.4.20-alt1 1432315196 installed <13>Jan 26 08:44:59 rpmi: libgfortran6-devel-6.3.1-alt1 1484277945 installed <13>Jan 26 08:45:01 rpmi: gcc6-fortran-6.3.1-alt1 1484277945 installed <13>Jan 26 08:45:01 rpmi: gcc-c++-common-1.4.20-alt1 1432315196 installed <13>Jan 26 08:45:01 rpmi: libstdc++6-devel-6.3.1-alt1 1484277945 installed <13>Jan 26 08:45:03 rpmi: gcc6-c++-6.3.1-alt1 1484277945 installed <13>Jan 26 08:45:03 rpmi: openmpi-2.0.1-alt1 1482882291 installed <13>Jan 26 08:45:03 rpmi: openmpi-devel-2.0.1-alt1 1482882291 installed <13>Jan 26 08:45:03 rpmi: libpfft-devel-1.0.7-alt1.alpha 1374202619 installed <13>Jan 26 08:45:03 rpmi: libfftw3-mpi-devel-1:3.3.4-alt1.1 1449202259 installed Installing pnfft-1.0.6-alt1.alpha.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.5986 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf pnfft-1.0.6 + echo 'Source #0 (pnfft-1.0.6.tar):' Source #0 (pnfft-1.0.6.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/pnfft-1.0.6.tar + cd pnfft-1.0.6 + /bin/chmod -c -Rf u+rwX,go-w . + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.5986 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd pnfft-1.0.6 + mpi-selector --set openmpi + source /usr/lib/openmpi/bin/mpivars.sh ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ grep -q /usr/lib/openmpi/bin ++ PATH=/usr/lib/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib/openmpi/man ++ MANPATH=/usr/lib/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + export MPIDIR=/usr/lib/openmpi + MPIDIR=/usr/lib/openmpi + ./bootstrap.sh PLEASE IGNORE WARNINGS AND ERRORS autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 autoreconf-default: configure.ac: tracing autoreconf-default: running: libtoolize --copy --force --install libtoolize-default: putting auxiliary files in AC_CONFIG_AUX_DIR, `build-aux'. libtoolize-default: copying file `build-aux/config.guess' libtoolize-default: copying file `build-aux/config.sub' libtoolize-default: copying file `build-aux/install-sh' libtoolize-default: copying file `build-aux/ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize-default: copying file `m4/libtool.m4' libtoolize-default: copying file `m4/ltoptions.m4' libtoolize-default: copying file `m4/ltsugar.m4' libtoolize-default: copying file `m4/ltversion.m4' libtoolize-default: copying file `m4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc autoreconf-default: running: /usr/bin/autoconf-2.60 --force autoreconf-default: running: /usr/bin/autoheader-2.60 --force autoreconf-default: running: automake --add-missing --copy --force-missing autoreconf-default: Leaving directory `.' + CFLAGS='-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include' + export CFLAGS + CXXFLAGS='-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include' + export CXXFLAGS + FFLAGS='-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include' + export FFLAGS + '[' -n '' ']' ++ printf %s '-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' + ASFLAGS=' -march=i586 -mtune=generic' + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --without-included-gettext --enable-static=no --enable-mpi --enable-threads --with-fftw3=/usr --with-fftw3-includedir=/usr/include/fftw3-mpi --with-pfft=/usr configure: WARNING: unrecognized options: --without-included-gettext, --enable-mpi configure: **************************************************************** configure: * Configuring in common/pnfft * configure: **************************************************************** checking build system type... i586-alt-linux-gnu checking host system type... i586-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for i586-alt-linux-mpicc... no checking for i586-alt-linux-mpixlc_r... no checking for i586-alt-linux-mpixlc... no checking for i586-alt-linux-hcc... no checking for i586-alt-linux-mpxlc_r... no checking for i586-alt-linux-mpxlc... no checking for i586-alt-linux-sxmpicc... no checking for i586-alt-linux-mpifcc... no checking for i586-alt-linux-mpgcc... no checking for i586-alt-linux-mpcc... no checking for i586-alt-linux-cmpicc... no checking for i586-alt-linux-cc... no checking for i586-alt-linux-gcc... i586-alt-linux-gcc checking for i586-alt-linux-gcc... (cached) i586-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i586-alt-linux-gcc accepts -g... yes checking for i586-alt-linux-gcc option to accept ISO C89... none needed checking whether i586-alt-linux-gcc understands -c and -o together... yes checking dependency style of i586-alt-linux-gcc... none checking for function MPI_Init... no checking for function MPI_Init in -lmpi... yes checking for mpi.h... yes checking for i586-alt-linux-gcc option to accept ISO C99... none needed checking for inline... inline checking for i586-alt-linux-mpif95... no checking for i586-alt-linux-mpxlf95_r... no checking for i586-alt-linux-mpxlf95... no checking for i586-alt-linux-ftn... no checking for i586-alt-linux-mpif90... no checking for i586-alt-linux-mpxlf90_r... no checking for i586-alt-linux-mpxlf90... no checking for i586-alt-linux-mpf90... no checking for i586-alt-linux-cmpif90c... no checking for i586-alt-linux-sxmpif90... no checking for i586-alt-linux-mpif77... no checking for i586-alt-linux-hf77... no checking for i586-alt-linux-mpxlf_r... no checking for i586-alt-linux-mpxlf... no checking for i586-alt-linux-mpifrt... no checking for i586-alt-linux-mpf77... no checking for i586-alt-linux-cmpifc... no checking for i586-alt-linux-xlf95... no checking for i586-alt-linux-pgf95... no checking for i586-alt-linux-pathf95... no checking for i586-alt-linux-ifort... no checking for i586-alt-linux-g95... no checking for i586-alt-linux-f95... no checking for i586-alt-linux-fort... no checking for i586-alt-linux-ifc... no checking for i586-alt-linux-efc... no checking for i586-alt-linux-openf95... no checking for i586-alt-linux-sunf95... no checking for i586-alt-linux-crayftn... no checking for i586-alt-linux-gfortran... i586-alt-linux-gfortran checking for i586-alt-linux-gfortran... (cached) i586-alt-linux-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether i586-alt-linux-gfortran accepts -g... yes checking for function MPI_INIT... no checking for function MPI_INIT in -lmpi_f77... no checking for function MPI_INIT in -lmpichf90... no checking for function MPI_INIT in -lfmpi... no checking for function MPI_INIT in -lfmpich... no configure: WARNING: *** Could not find MPI Fortran compiler; using default Fortran wrappers. checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by i586-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-alt-linux-gnu file names to i586-alt-linux-gnu format... func_convert_file_noop checking how to convert i586-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i586-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for i586-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i586-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for i586-alt-linux-strip... no checking for strip... strip checking for i586-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from i586-alt-linux-gcc object... ok checking for sysroot... no checking for i586-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... i586-alt-linux-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if i586-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for i586-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if i586-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if i586-alt-linux-gcc static flag -static works... no checking if i586-alt-linux-gcc supports -c -o file.o... yes checking if i586-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for i586-alt-linux-gfortran option to produce PIC... -fPIC checking if i586-alt-linux-gfortran PIC flag -fPIC works... yes checking if i586-alt-linux-gfortran static flag -static works... no checking if i586-alt-linux-gfortran supports -c -o file.o... yes checking if i586-alt-linux-gfortran supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for sincos in -lm... yes checking for OpenMP flag of C compiler... unknown checking whether directory /usr/include/fftw3-mpi exists... yes checking whether directory /usr/lib exists... yes checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes checking fftw3-mpi.h usability... yes checking fftw3-mpi.h presence... no configure: WARNING: fftw3-mpi.h: accepted by the compiler, rejected by the preprocessor! configure: WARNING: fftw3-mpi.h: proceeding with the compiler's result checking for fftw3-mpi.h... yes checking for fftw_execute in -lfftw3_mpi... yes checking for fftw_init_threads in -lfftw3_mpi_threads... yes checking for fftw_mpi_init in -lfftw3_mpi... yes checking whether directory /usr/include exists... yes checking whether directory /usr/lib exists... yes checking pfft.h usability... yes checking pfft.h presence... no configure: WARNING: pfft.h: accepted by the compiler, rejected by the preprocessor! configure: WARNING: pfft.h: proceeding with the compiler's result checking for pfft.h... yes checking for pfft_execute in -lpfft... yes checking for ptrdiff_t... yes checking for long double... yes checking size of ptrdiff_t... 4 checking size of MPI_Fint... 4 checking for library containing log... none required checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating pnfft.pc config.status: creating api/pnfft.f03 config.status: creating api/pnfftl.f03 config.status: creating kernel/Makefile config.status: creating util/Makefile config.status: creating api/Makefile config.status: creating tests/Makefile config.status: creating tests/f03/Makefile config.status: creating config.h config.status: creating fconfig.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext, --enable-mpi + '[' -n '' ']' + NPROCS=1 + make -j1 make: Entering directory `/usr/src/RPM/BUILD/pnfft-1.0.6' make all-recursive make[1]: Entering directory `/usr/src/RPM/BUILD/pnfft-1.0.6' Making all in kernel make[2]: Entering directory `/usr/src/RPM/BUILD/pnfft-1.0.6/kernel' /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o ndft-parallel.lo ndft-parallel.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c ndft-parallel.c -fPIC -DPIC -o .libs/ndft-parallel.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o assign.lo assign.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c assign.c -fPIC -DPIC -o .libs/assign.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o matrix_D.lo matrix_D.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c matrix_D.c -fPIC -DPIC -o .libs/matrix_D.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o bessel_i0.lo bessel_i0.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c bessel_i0.c -fPIC -DPIC -o .libs/bessel_i0.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o bessel_i1.lo bessel_i1.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c bessel_i1.c -fPIC -DPIC -o .libs/bessel_i1.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o bspline.lo bspline.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c bspline.c -fPIC -DPIC -o .libs/bspline.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o sinc.lo sinc.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c sinc.c -fPIC -DPIC -o .libs/sinc.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o malloc.lo malloc.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c malloc.c -fPIC -DPIC -o .libs/malloc.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o timer.lo timer.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c timer.c -fPIC -DPIC -o .libs/timer.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o check.lo check.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c check.c -fPIC -DPIC -o .libs/check.o /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -L/usr/lib -L/usr/lib -o libkernel.la ndft-parallel.lo assign.lo matrix_D.lo bessel_i0.lo bessel_i1.lo bspline.lo sinc.lo malloc.lo timer.lo check.lo -lfftw3_mpi -lfftw3_mpi -lm -L/usr/lib/openmpi/lib -lmpi libtool: link: ar cru .libs/libkernel.a .libs/ndft-parallel.o .libs/assign.o .libs/matrix_D.o .libs/bessel_i0.o .libs/bessel_i1.o .libs/bspline.o .libs/sinc.o .libs/malloc.o .libs/timer.o .libs/check.o libtool: link: ranlib .libs/libkernel.a libtool: link: ( cd ".libs" && rm -f "libkernel.la" && ln -s "../libkernel.la" "libkernel.la" ) make[2]: Leaving directory `/usr/src/RPM/BUILD/pnfft-1.0.6/kernel' Making all in util make[2]: Entering directory `/usr/src/RPM/BUILD/pnfft-1.0.6/util' /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o util.lo util.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c util.c -fPIC -DPIC -o .libs/util.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o getargs.lo getargs.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I../api -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c getargs.c -fPIC -DPIC -o .libs/getargs.o /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -L/usr/lib -L/usr/lib -o libutil.la util.lo getargs.lo -lfftw3_mpi -lfftw3_mpi -lm -L/usr/lib/openmpi/lib -lmpi libtool: link: ar cru .libs/libutil.a .libs/util.o .libs/getargs.o libtool: link: ranlib .libs/libutil.a libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" ) make[2]: Leaving directory `/usr/src/RPM/BUILD/pnfft-1.0.6/util' Making all in api make[2]: Entering directory `/usr/src/RPM/BUILD/pnfft-1.0.6/api' /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o api-basic.lo api-basic.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c api-basic.c -fPIC -DPIC -o .libs/api-basic.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o api-adv.lo api-adv.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c api-adv.c -fPIC -DPIC -o .libs/api-adv.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o api-guru.lo api-guru.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c api-guru.c -fPIC -DPIC -o .libs/api-guru.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c -o f03-wrap.lo f03-wrap.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../kernel -I/usr/include -I/usr/include/fftw3-mpi -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -c f03-wrap.c -fPIC -DPIC -o .libs/f03-wrap.o /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -L/usr/lib -L/usr/lib -o libapi.la api-basic.lo api-adv.lo api-guru.lo f03-wrap.lo -lfftw3_mpi -lfftw3_mpi -lm -L/usr/lib/openmpi/lib -lmpi libtool: link: ar cru .libs/libapi.a .libs/api-basic.o .libs/api-adv.o .libs/api-guru.o .libs/f03-wrap.o libtool: link: ranlib .libs/libapi.a libtool: link: ( cd ".libs" && rm -f "libapi.la" && ln -s "../libapi.la" "libapi.la" ) make[2]: Leaving directory `/usr/src/RPM/BUILD/pnfft-1.0.6/api' Making all in . make[2]: Entering directory `/usr/src/RPM/BUILD/pnfft-1.0.6' /bin/sh ./libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/lib/openmpi/include -no-undefined -version-info 0:0:0 -L/usr/lib -L/usr/lib -o libpnfft.la -rpath /usr/lib kernel/libkernel.la util/libutil.la api/libapi.la -lpfft -lfftw3_mpi -lfftw3_mpi -lm -L/usr/lib/openmpi/lib -lmpi libtool: link: i586-alt-linux-gcc -shared -fPIC -DPIC -Wl,--whole-archive kernel/.libs/libkernel.a util/.libs/libutil.a api/.libs/libapi.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -L/usr/lib -L/usr/lib/openmpi/lib /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -ldl -lnuma -lrt -lutil -lpfft -lfftw3_mpi -lm /usr/lib/openmpi/lib/libmpi.so -O2 -march=i586 -mtune=generic -pthread -Wl,-soname -Wl,libpnfft.so.0 -o .libs/libpnfft.so.0.0.0 /usr/bin/ld: cannot find -lnuma collect2: error: ld returned 1 exit status make[2]: *** [libpnfft.la] Error 1 make[2]: Leaving directory `/usr/src/RPM/BUILD/pnfft-1.0.6' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/usr/src/RPM/BUILD/pnfft-1.0.6' make: *** [all] Error 2 make: Leaving directory `/usr/src/RPM/BUILD/pnfft-1.0.6' error: Bad exit status from /usr/src/tmp/rpm-tmp.5986 (%build) RPM build errors: Bad exit status from /usr/src/tmp/rpm-tmp.5986 (%build) Command exited with non-zero status 1 22.75user 5.49system 0:27.85elapsed 101%CPU (0avgtext+0avgdata 44888maxresident)k 0inputs+0outputs (0major+871593minor)pagefaults 0swaps hsh-rebuild: rebuild of `pnfft-1.0.6-alt1.alpha.src.rpm' failed. Command exited with non-zero status 1 45.56user 11.19system 0:55.73elapsed 101%CPU (0avgtext+0avgdata 134208maxresident)k 8736inputs+0outputs (0major+1236176minor)pagefaults 0swaps