<86>Jan 26 08:50:03 userdel[4079]: delete user 'rooter' <86>Jan 26 08:50:03 groupadd[4094]: group added to /etc/group: name=rooter, GID=522 <86>Jan 26 08:50:03 groupadd[4094]: group added to /etc/gshadow: name=rooter <86>Jan 26 08:50:03 groupadd[4094]: new group: name=rooter, GID=522 <86>Jan 26 08:50:03 useradd[4102]: new user: name=rooter, UID=522, GID=522, home=/root, shell=/bin/bash <86>Jan 26 08:50:03 userdel[4113]: delete user 'builder' <86>Jan 26 08:50:03 userdel[4113]: removed group 'builder' owned by 'builder' <86>Jan 26 08:50:03 userdel[4113]: removed shadow group 'builder' owned by 'builder' <86>Jan 26 08:50:03 groupadd[4124]: group added to /etc/group: name=builder, GID=523 <86>Jan 26 08:50:03 groupadd[4124]: group added to /etc/gshadow: name=builder <86>Jan 26 08:50:03 groupadd[4124]: new group: name=builder, GID=523 <86>Jan 26 08:50:03 useradd[4135]: new user: name=builder, UID=523, GID=523, home=/usr/src, shell=/bin/bash <13>Jan 26 08:50:10 rpmi: libibverbs-1.1.8-alt1 1423045780 installed <13>Jan 26 08:50:10 rpmi: librdmacm-1.0.19.1-alt2 1423057440 installed <13>Jan 26 08:50:10 rpmi: libdapl-1.2.16-alt2 1297310493 installed <13>Jan 26 08:50:10 rpmi: libquadmath0-6.3.1-alt1 1484277945 installed <13>Jan 26 08:50:10 rpmi: libgfortran3-6.3.1-alt1 1484277945 installed <13>Jan 26 08:50:10 rpmi: libopenblas-0.2.14-alt1.git20150324 1433158703 installed <13>Jan 26 08:50:10 rpmi: gcc-fortran-common-1.4.20-alt1 1432315196 installed <13>Jan 26 08:50:10 rpmi: ca-certificates-2016.09.28-alt1 1475233825 installed <13>Jan 26 08:50:11 rpmi: libcrypto10-1.0.2j-alt1 1474898021 installed <13>Jan 26 08:50:11 rpmi: libssh2-1.4.3-alt2 1448445219 installed <13>Jan 26 08:50:11 rpmi: libopenblas-devel-0.2.14-alt1.git20150324 1433158703 installed <13>Jan 26 08:50:11 rpmi: libquadmath6-devel-6.3.1-alt1 1484277945 installed <13>Jan 26 08:50:11 rpmi: libgfortran6-devel-6.3.1-alt1 1484277945 installed <13>Jan 26 08:50:12 rpmi: gcc6-fortran-6.3.1-alt1 1484277945 installed <13>Jan 26 08:50:12 rpmi: libquadmath4.8-devel-4.8.2-alt5 1454585324 installed <13>Jan 26 08:50:12 rpmi: libgfortran4.8-devel-4.8.2-alt5 1454585324 installed <13>Jan 26 08:50:12 rpmi: libxblas-1.0.248-alt1 1322010690 installed <13>Jan 26 08:50:13 rpmi: liblapack-1:3.5.0-alt1 1401382336 installed <13>Jan 26 08:50:13 rpmi: zlib-devel-1.2.8-alt1 1371079011 installed <13>Jan 26 08:50:13 rpmi: libibcommon-1.2.0-alt2 1297310561 installed <13>Jan 26 08:50:13 rpmi: libibcommon-devel-1.2.0-alt2 1297310561 installed <13>Jan 26 08:50:13 rpmi: libibumad-1.3.6-alt2 1297311906 installed <13>Jan 26 08:50:13 rpmi: libibumad-devel-1.3.6-alt2 1297311906 installed <13>Jan 26 08:50:13 rpmi: torque-4.2.1-alt1 1362870992 installed <13>Jan 26 08:50:13 rpmi: libtorque-4.2.1-alt1 1362870992 installed <13>Jan 26 08:50:13 rpmi: libnuma-2.0.11-alt1 1450022594 installed <13>Jan 26 08:50:13 rpmi: libsz2-2.1-alt4 1300649104 installed <13>Jan 26 08:50:13 rpmi: tcsh-6.18.01-alt2.qa1 1479380728 installed <13>Jan 26 08:50:13 rpmi: rpm-macros-mpi-selector-1.0.3-alt2 1289984589 installed <13>Jan 26 08:50:13 rpmi: mpi-selector-1.0.3-alt2 1289984589 installed <13>Jan 26 08:50:13 rpmi: openmpi-compat-1.6.4-alt3 1482880775 installed <13>Jan 26 08:50:13 rpmi: openmpi-lib-compat-1.6.4-alt3 1482880775 installed <13>Jan 26 08:50:13 rpmi: libpnetcdf-1.6.0-alt1 1426128079 installed <13>Jan 26 08:50:13 rpmi: libsysfs-2.1.0-alt8 1435686568 installed <13>Jan 26 08:50:13 rpmi: libsysfs-devel-2.1.0-alt8 1435686568 installed <13>Jan 26 08:50:13 rpmi: libibverbs-devel-1.1.8-alt1 1423045780 installed <13>Jan 26 08:50:13 rpmi: librdmacm-devel-1.0.19.1-alt2 1423057440 installed <13>Jan 26 08:50:13 rpmi: libdapl-devel-1.2.16-alt2 1297310493 installed <13>Jan 26 08:50:13 rpmi: libnghttp2-1.15.0-alt1 1474972278 installed <13>Jan 26 08:50:13 rpmi: libXdmcp-1.1.1-alt1 1334617701 installed <13>Jan 26 08:50:13 rpmi: libXau-1.0.8-alt1 1369565808 installed <13>Jan 26 08:50:13 rpmi: libxcb-1.12-alt1 1471592579 installed <13>Jan 26 08:50:13 rpmi: libX11-locales-3:1.6.4-alt1 1480493483 installed <13>Jan 26 08:50:14 rpmi: libX11-3:1.6.4-alt1 1480493483 installed <13>Jan 26 08:50:14 rpmi: libTraceInput-1.3.0-alt5 1340619549 installed <13>Jan 26 08:50:14 rpmi: libmpe2-1.3.0-alt5 1340619549 installed <13>Jan 26 08:50:14 rpmi: libhdf5-8-mpi-1.8.13-alt1 1401877722 installed <13>Jan 26 08:50:14 rpmi: gcc-c++-common-1.4.20-alt1 1432315196 installed <13>Jan 26 08:50:15 rpmi: libstdc++6-devel-6.3.1-alt1 1484277945 installed <13>Jan 26 08:50:16 rpmi: gcc6-c++-6.3.1-alt1 1484277945 installed <13>Jan 26 08:50:16 rpmi: openmpi-2.0.1-alt1 1482882291 installed <13>Jan 26 08:50:17 rpmi: openmpi-devel-2.0.1-alt1 1482882291 installed <13>Jan 26 08:50:17 rpmi: libhdf5-mpi-devel-1.8.13-alt1 1401877722 installed <13>Jan 26 08:50:17 rpmi: bc-1:1.06-alt4 1461014970 installed <13>Jan 26 08:50:17 rpmi: libtinfo-devel-5.9-alt8 1456756589 installed <13>Jan 26 08:50:17 rpmi: libncurses-devel-5.9-alt8 1456756589 installed <13>Jan 26 08:50:17 rpmi: libexpat-2.1.0-alt1 1347469773 installed <13>Jan 26 08:50:17 rpmi: python-modules-curses-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:17 rpmi: libverto-0.2.6-alt1_6 1455633232 installed <13>Jan 26 08:50:17 rpmi: libkeyutils-1.5.9-alt2 1464351238 installed <13>Jan 26 08:50:17 rpmi: libcom_err-1.42.13-alt2 1449075923 installed <13>Jan 26 08:50:17 rpmi: libkrb5-1.14.2-alt2 1465464128 installed <13>Jan 26 08:50:17 rpmi: libssl10-1.0.2j-alt1 1474898021 installed <13>Jan 26 08:50:17 rpmi: libcurl-7.52.1-alt1.S1 1482481746 installed <13>Jan 26 08:50:17 rpmi: libnetcdf7-mpi-4.3.2-alt1 1401877938 installed <13>Jan 26 08:50:17 rpmi: libgdbm-1.8.3-alt10 1454943334 installed <13>Jan 26 08:50:17 rpmi: python-modules-compiler-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:17 rpmi: python-modules-email-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:17 rpmi: python-modules-unittest-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:17 rpmi: python-modules-encodings-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-modules-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-modules-xml-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-modules-hotshot-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-modules-bsddb-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-modules-ctypes-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-modules-multiprocessing-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-modules-logging-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: python-dev-2.7.11-alt3 1460726037 installed <13>Jan 26 08:50:18 rpmi: libnetcdf-mpi-devel-4.3.2-alt1 1401877938 installed <13>Jan 26 08:50:18 rpmi: libcurl-devel-7.52.1-alt1.S1 1482481746 installed <13>Jan 26 08:50:18 rpmi: liblapack-devel-1:3.5.0-alt1 1401382336 installed <13>Jan 26 08:50:18 rpmi: libuuid-devel-2.29.0-alt1 1479415870 installed add_optflags: invalid option -- '-' error: Unknown option ? in add_optflags(a:f:t:p:w:W:d:g:O:A:C:D:E:H:i:M:n:P:U:u:l:s:X:B:I:L:b:V:m:x:c:S:E:o:v:) Installing libcf-mpi-1.0-alt1.beta1.2011092223.src.rpm Building target platforms: i586 Building for target i586 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.68994 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf libcf-mpi-1.0 + echo 'Source #0 (libcf-mpi-1.0.tar):' Source #0 (libcf-mpi-1.0.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/libcf-mpi-1.0.tar + cd libcf-mpi-1.0 + /bin/chmod -c -Rf u+rwX,go-w . + sed -i 's|@HDFDIR@|/usr/lib/openmpi|' setup.py.in + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.68994 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd libcf-mpi-1.0 + mpi-selector --set openmpi + source /usr/lib/openmpi/bin/mpivars.sh ++ echo /usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ grep -q /usr/lib/openmpi/bin ++ PATH=/usr/lib/openmpi/bin:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games ++ export PATH ++ echo ++ grep -q /usr/lib/openmpi/lib ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ echo ++ grep -q /usr/lib/openmpi/man ++ MANPATH=/usr/lib/openmpi/man: ++ export MANPATH + export 'OMPI_LDFLAGS=-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' + OMPI_LDFLAGS='-Wl,--as-needed,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib' ++ nc-config --cflags + export 'CPPFLAGS=-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include' + CPPFLAGS='-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include' + autoreconf -fisv autoreconf-default: Entering directory `.' autoreconf-default: configure.ac: not using Gettext autoreconf-default: running: aclocal --force -I m4 configure.ac:237: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4161: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5236: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:237: the top level configure.ac:237: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4161: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5236: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:237: the top level configure.ac:237: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4161: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5236: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:237: the top level configure.ac:237: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4161: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5236: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:237: the top level autoreconf-default: configure.ac: tracing configure.ac:237: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4161: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5236: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:237: the top level configure.ac:237: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2663: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2680: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4161: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5236: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:237: the top level autoreconf-default: running: libtoolize --force --install libtoolize-default: putting auxiliary files in `.'. libtoolize-default: linking file `./config.guess' libtoolize-default: linking file `./config.sub' libtoolize-default: linking file `./install-sh' libtoolize-default: linking file `./ltmain.sh' libtoolize-default: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize-default: linking file `m4/libtool.m4' libtoolize-default: linking file `m4/ltoptions.m4' libtoolize-default: linking file `m4/ltsugar.m4' libtoolize-default: linking file `m4/ltversion.m4' libtoolize-default: linking file `m4/lt~obsolete.m4' autoreconf-default: configure.ac: not using Intltool autoreconf-default: configure.ac: not using gtk-doc autoreconf-default: running: /usr/bin/autoconf-2.60 --force autoreconf-default: running: /usr/bin/autoheader-2.60 --force autoreconf-default: running: automake --add-missing --force-missing /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libcf.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' Makefile.am:16: while processing Libtool library 'libcf.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libnccf_axis.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' gridspec_api/axis/Makefile.am:10: while processing Libtool library 'libnccf_axis.la' parallel-tests: installing './test-driver' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libnccf_coord.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' gridspec_api/coord/Makefile.am:10: while processing Libtool library 'libnccf_coord.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libnccf_data.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' gridspec_api/data/Makefile.am:10: while processing Libtool library 'libnccf_data.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libnccf_global.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' gridspec_api/global/Makefile.am:9: while processing Libtool library 'libnccf_global.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libnccf_grid.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' gridspec_api/grid/Makefile.am:10: while processing Libtool library 'libnccf_grid.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libnccf_host.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' gridspec_api/host/Makefile.am:11: while processing Libtool library 'libnccf_host.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libnccf_mosaic.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' gridspec_api/mosaic/Makefile.am:11: while processing Libtool library 'libnccf_mosaic.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libnccf_regrid.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' gridspec_api/regrid/Makefile.am:11: while processing Libtool library 'libnccf_regrid.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libcf_src.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' src/Makefile.am:20: while processing Libtool library 'libcf_src.la' /usr/share/automake-1.14/am/ltlibrary.am: warning: 'libcff_src.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' src/Makefile.am:44: while processing Libtool library 'libcff_src.la' autoreconf-default: Leaving directory `.' ++ nc-config --cflags + CFLAGS='-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include' + export CFLAGS ++ nc-config --cflags + CXXFLAGS='-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include' + export CXXFLAGS ++ nc-config --cflags + FFLAGS='-pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include' + export FFLAGS + '[' -n '' ']' ++ sed -r 's/(^|[[:space:]]+)-[^m][^[:space:]]*//g' ++ printf %s '-pipe -Wall -g -O2 -march=i586 -mtune=generic $(nc-config --cflags) -I/usr/lib/openmpi/include' + ASFLAGS=' -march=i586 -mtune=generic $(nc-config' + export ASFLAGS + export lt_cv_deplibs_check_method=pass_all + lt_cv_deplibs_check_method=pass_all + readlink -e -- ./configure + xargs -ri dirname -- '{}' + xargs -ri find '{}' -type f '(' -name config.sub -or -name config.guess ')' -printf '%h/\n' + sort -u + xargs -rn1 install -pm755 -- /usr/share/gnu-config/config.sub /usr/share/gnu-config/config.guess + ./configure --build=i586-alt-linux --host=i586-alt-linux --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/lib --localstatedir=/var/lib --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-dependency-tracking --without-included-gettext --includedir=/usr/lib/openmpi/include --libdir=/usr/lib/openmpi/lib --enable-static=no --enable-docs --enable-f90 --with-netcdf=/usr/lib/openmpi --with-blas-lib=-lopenblas --with-lapack-lib=-llapack --enable-parallel configure: WARNING: unrecognized options: --without-included-gettext configure: libcf 1.0-beta1-snapshot2011092223 checking build system type... i586-alt-linux-gnu checking host system type... i586-alt-linux-gnu checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes configure: checking user options checking whether FC is set to ''... no configure: finding C compiler checking for i586-alt-linux-gcc... i586-alt-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i586-alt-linux-gcc accepts -g... yes checking for i586-alt-linux-gcc option to accept ISO C89... none needed checking whether i586-alt-linux-gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of i586-alt-linux-gcc... none configure: finding Fortran compiler (required, even if Fortran API is not desired) checking for i586-alt-linux-gfortran... i586-alt-linux-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether i586-alt-linux-gfortran accepts -g... yes checking whether documentation is to be built... yes checking whether gridspec test data should be fetched from Unidata FTP site... no checking whether logging is enabled (useful to CF developers, mainly... no checking whether parallel processing is enabled (CC should be set to mpicc or equivalent... yes checking whether parallel tests should be run... no checking whether extra tests on sample data should be performed... no checking whether regridding API is desired... checking whether Fortran 90 API is desired... no checking whether a location for the netCDF library was specified... /usr/lib/openmpi checking for ncdump... ncdump checking how to run the C preprocessor... i586-alt-linux-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes checking for library containing MPI_Init... -lmpi ./configure: line 5747: test: too many arguments configure: finding other utilities configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by i586-alt-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i586-alt-linux-gnu file names to i586-alt-linux-gnu format... func_convert_file_noop checking how to convert i586-alt-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i586-alt-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... (cached) pass_all checking for i586-alt-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for i586-alt-linux-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for i586-alt-linux-strip... no checking for strip... strip checking for i586-alt-linux-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from i586-alt-linux-gcc object... ok checking for sysroot... no checking for i586-alt-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if i586-alt-linux-gcc supports -fno-rtti -fno-exceptions... no checking for i586-alt-linux-gcc option to produce PIC... -fPIC -DPIC checking if i586-alt-linux-gcc PIC flag -fPIC -DPIC works... yes checking if i586-alt-linux-gcc static flag -static works... no checking if i586-alt-linux-gcc supports -c -o file.o... yes checking if i586-alt-linux-gcc supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for i586-alt-linux-gfortran option to produce PIC... -fPIC checking if i586-alt-linux-gfortran PIC flag -fPIC works... yes checking if i586-alt-linux-gfortran static flag -static works... no checking if i586-alt-linux-gfortran supports -c -o file.o... yes checking if i586-alt-linux-gfortran supports -c -o file.o... (cached) yes checking whether the i586-alt-linux-gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from i586-alt-linux-gfortran... -v checking for Fortran libraries of i586-alt-linux-gfortran... -L/usr/lib/openmpi/lib -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. -lmpi -llapack -lopenblas -lgfortran -lm -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking how to get verbose linking output from i586-alt-linux-gfortran... (cached) -v checking for Fortran libraries of i586-alt-linux-gfortran... (cached) -L/usr/lib/openmpi/lib -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. -lmpi -llapack -lopenblas -lgfortran -lm -lquadmath configure: checking for large file support checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for strerror... yes checking for strlcat... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for struct stat.st_blksize... yes checking for size_t... (cached) yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 4 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking for library containing deflate... -lz checking for library containing ceil... none required checking for library containing curl_free... -lcurl checking for library containing nc_open... -lnetcdf checking for library containing dcopy_... none required checking for library containing dcopy_... (cached) none required checking for library containing dgetrf_... none required checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for uuid_generate in -luuid... yes configure: Successfully compiling code containing uuid? yes configure: Fortran compiler supports 2003 features checking for python... python configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating pycf/Makefile config.status: creating pycf/__init__.py config.status: creating src/Makefile config.status: creating include/Makefile config.status: creating gridspec_api/Makefile config.status: creating gridspec_api/global/Makefile config.status: creating gridspec_api/axis/Makefile config.status: creating gridspec_api/coord/Makefile config.status: creating gridspec_api/grid/Makefile config.status: creating gridspec_api/data/Makefile config.status: creating gridspec_api/regrid/Makefile config.status: creating gridspec_api/mosaic/Makefile config.status: creating gridspec_api/host/Makefile config.status: creating examples/Makefile config.status: creating setup.py config.status: creating cf_config.h config.status: creating nfconfig.inc config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --without-included-gettext + '[' -n '' ']' + NPROCS=1 + make -j1 make: Entering directory `/usr/src/RPM/BUILD/libcf-mpi-1.0' make all-recursive make[1]: Entering directory `/usr/src/RPM/BUILD/libcf-mpi-1.0' Making all in include make[2]: Entering directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/include' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/include' Making all in src make[2]: Entering directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/src' /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccoord.lo nccoord.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccoord.c -fPIC -DPIC -o .libs/nccoord.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o cffiles.lo cffiles.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c cffiles.c -fPIC -DPIC -o .libs/cffiles.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o cfvars.lo cfvars.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c cfvars.c -fPIC -DPIC -o .libs/cfvars.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o cfcvars.lo cfcvars.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c cfcvars.c -fPIC -DPIC -o .libs/cfcvars.o cfcvars.c:677:1: warning: 'def_vert_var' defined but not used [-Wunused-function] def_vert_var(int ncid, const char *name, nc_type xtype, size_t len, ^~~~~~~~~~~~ cfcvars.c: In function 'inq_coord_var': cfcvars.c:354:9: warning: 'vnum' may be used uninitialized in this function [-Wmaybe-uninitialized] if (vnum < NPRES_UNITS) ^ cfcvars.c:328:21: warning: 'positive_up' may be used uninitialized in this function [-Wmaybe-uninitialized] *positive_upp = positive_up; ~~~~~~~~~~~~~~^~~~~~~~~~~~~ cfcvars.c: In function 'nccf_inq_lvl_hybrid_height': cfcvars.c:1621:29: warning: array subscript is above array bounds [-Warray-bounds] *orog_varidp = termids[3]; ~~~~~~~^~~ /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o cfsubsets.lo cfsubsets.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c cfsubsets.c -fPIC -DPIC -o .libs/cfsubsets.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o cferror.lo cferror.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c cferror.c -fPIC -DPIC -o .libs/cferror.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o cdTimeConv.lo cdTimeConv.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c cdTimeConv.c -fPIC -DPIC -o .libs/cdTimeConv.o cdTimeConv.c: In function 'cdComp2Rel': cdTimeConv.c:445:3: warning: implicit declaration of function 'CdDivDelTime' [-Wimplicit-function-declaration] CdDivDelTime(base_etm, etm, deltime, old_timetype, 1970, &ndel); ^~~~~~~~~~~~ cdTimeConv.c:434:2: warning: enumeration value 'cdFraction' not handled in switch [-Wswitch] switch(unit){ ^~~~~~ cdTimeConv.c:450:2: warning: enumeration value 'cdFraction' not handled in switch [-Wswitch] switch(unit){ ^~~~~~ cdTimeConv.c: In function 'cdRel2Comp': cdTimeConv.c:503:3: warning: enumeration value 'cdFraction' not handled in switch [-Wswitch] switch(unit){ ^~~~~~ cdTimeConv.c:513:2: warning: enumeration value 'cdFraction' not handled in switch [-Wswitch] switch(unit){ ^~~~~~ cdTimeConv.c:569:4: warning: implicit declaration of function 'CdAddDelTime' [-Wimplicit-function-declaration] CdAddDelTime(base_etm,idelta,deltime,old_timetype,1970,&result_etm); ^~~~~~~~~~~~ cdTimeConv.c: In function 'cdAbs2Comp': cdTimeConv.c:738:3: warning: enumeration value 'cdWeek' not handled in switch [-Wswitch] switch(compon[iform]){ ^~~~~~ cdTimeConv.c:738:3: warning: enumeration value 'cdSeason' not handled in switch [-Wswitch] cdTimeConv.c: In function 'cdComp2Abs': cdTimeConv.c:797:3: warning: enumeration value 'cdWeek' not handled in switch [-Wswitch] switch(compon[iform]){ ^~~~~~ cdTimeConv.c:797:3: warning: enumeration value 'cdSeason' not handled in switch [-Wswitch] cdTimeConv.c: In function 'cdToHours': cdTimeConv.c:909:2: warning: enumeration value 'cdMonth' not handled in switch [-Wswitch] switch(unit){ ^~~~~~ cdTimeConv.c:909:2: warning: enumeration value 'cdSeason' not handled in switch [-Wswitch] cdTimeConv.c:909:2: warning: enumeration value 'cdYear' not handled in switch [-Wswitch] cdTimeConv.c:909:2: warning: enumeration value 'cdFraction' not handled in switch [-Wswitch] cdTimeConv.c: In function 'cdFromHours': cdTimeConv.c:932:2: warning: enumeration value 'cdMonth' not handled in switch [-Wswitch] switch(unit){ ^~~~~~ cdTimeConv.c:932:2: warning: enumeration value 'cdSeason' not handled in switch [-Wswitch] cdTimeConv.c:932:2: warning: enumeration value 'cdYear' not handled in switch [-Wswitch] cdTimeConv.c:932:2: warning: enumeration value 'cdFraction' not handled in switch [-Wswitch] cdTimeConv.c: In function 'cdToHours': cdTimeConv.c:926:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ cdTimeConv.c: In function 'cdFromHours': cdTimeConv.c:949:9: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ cdTimeConv.c: In function 'cdComp2Rel': cdTimeConv.c:455:19: warning: 'delta' may be used uninitialized in this function [-Wmaybe-uninitialized] *reltime = 60.0 * delta; ~~~~~^~~~~~~ cdTimeConv.c: In function 'cdRel2Comp': cdTimeConv.c:569:4: warning: 'idelta' may be used uninitialized in this function [-Wmaybe-uninitialized] CdAddDelTime(base_etm,idelta,deltime,old_timetype,1970,&result_etm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdTimeConv.c:576:3: warning: 'delta' may be used uninitialized in this function [-Wmaybe-uninitialized] Cde2h(base_etm+delta, old_timetype, 1970, &humantime); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdTimeConv.c:563:4: warning: 'baseunits' may be used uninitialized in this function [-Wmaybe-uninitialized] if(baseunits == cdMonth){ ^ /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o timeArith.lo timeArith.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c timeArith.c -fPIC -DPIC -o .libs/timeArith.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o timeConv.lo timeConv.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c timeConv.c -fPIC -DPIC -o .libs/timeConv.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o libcfAddOn.lo libcfAddOn.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c libcfAddOn.c -fPIC -DPIC -o .libs/libcfAddOn.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o cflistitem.lo cflistitem.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c cflistitem.c -fPIC -DPIC -o .libs/cflistitem.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_varObj.lo nccf_varObj.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_varObj.c -fPIC -DPIC -o .libs/nccf_varObj.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_strerror.lo nccf_strerror.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_strerror.c -fPIC -DPIC -o .libs/nccf_strerror.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_solve.lo nccf_solve.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_solve.c -fPIC -DPIC -o .libs/nccf_solve.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_put_var_slice_text.lo nccf_put_var_slice_text.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_put_var_slice_text.c -fPIC -DPIC -o .libs/nccf_put_var_slice_text.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_linesearch_indices.lo nccf_linesearch_indices.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_linesearch_indices.c -fPIC -DPIC -o .libs/nccf_linesearch_indices.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_linear_interp.lo nccf_linear_interp.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_linear_interp.c -fPIC -DPIC -o .libs/nccf_linear_interp.o In file included from nccf_linear_interp.c:11:0: ./nccf_linear_interp.h: In function 'nccf_linear_interp_double': ./nccf_linear_interp.h:29:17: warning: 'sum_weights' may be used uninitialized in this function [-Wmaybe-uninitialized] sum_weights += weights[j]; ~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from nccf_linear_interp.c:17:0: ./nccf_linear_interp.h: In function 'nccf_linear_interp_float': ./nccf_linear_interp.h:29:17: warning: 'sum_weights' may be used uninitialized in this function [-Wmaybe-uninitialized] sum_weights += weights[j]; ~~~~~~~~~~~~^~~~~~~~~~~~~ /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_index_to_corner_vector.lo nccf_index_to_corner_vector.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_index_to_corner_vector.c -fPIC -DPIC -o .libs/nccf_index_to_corner_vector.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_index2vector.lo nccf_index2vector.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_index2vector.c -fPIC -DPIC -o .libs/nccf_index2vector.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_handle_error.lo nccf_handle_error.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_handle_error.c -fPIC -DPIC -o .libs/nccf_handle_error.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_tripolar_halfgrid.lo nccf_get_tripolar_halfgrid.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_tripolar_halfgrid.c -fPIC -DPIC -o .libs/nccf_get_tripolar_halfgrid.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_tripolar_grid.lo nccf_get_tripolar_grid.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_tripolar_grid.c -fPIC -DPIC -o .libs/nccf_get_tripolar_grid.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_start_end_bound_indices.lo nccf_get_start_end_bound_indices.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_start_end_bound_indices.c -fPIC -DPIC -o .libs/nccf_get_start_end_bound_indices.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_position.lo nccf_get_position.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_position.c -fPIC -DPIC -o .libs/nccf_get_position.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_multi_index.lo nccf_get_multi_index.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_multi_index.c -fPIC -DPIC -o .libs/nccf_get_multi_index.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_linear_weights.lo nccf_get_linear_weights.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_linear_weights.c -fPIC -DPIC -o .libs/nccf_get_linear_weights.o In file included from nccf_get_linear_weights.c:17:0: ./nccf_get_linear_weights.h: In function 'nccf_get_linear_weights_double': ./nccf_get_linear_weights.h:13:7: warning: variable 'ier' set but not used [-Wunused-but-set-variable] int ier; ^~~ In file included from nccf_get_linear_weights.c:27:0: ./nccf_get_linear_weights.h: In function 'nccf_get_linear_weights_float': ./nccf_get_linear_weights.h:13:7: warning: variable 'ier' set but not used [-Wunused-but-set-variable] int ier; ^~~ /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_flat_index.lo nccf_get_flat_index.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_flat_index.c -fPIC -DPIC -o .libs/nccf_get_flat_index.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_cubedsphere_grid.lo nccf_get_cubedsphere_grid.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_cubedsphere_grid.c -fPIC -DPIC -o .libs/nccf_get_cubedsphere_grid.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_bipolar_cap.lo nccf_get_bipolar_cap.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_bipolar_cap.c -fPIC -DPIC -o .libs/nccf_get_bipolar_cap.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_generate_id.lo nccf_generate_id.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_generate_id.c -fPIC -DPIC -o .libs/nccf_generate_id.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_find_next_indices.lo nccf_find_next_indices.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_find_next_indices.c -fPIC -DPIC -o .libs/nccf_find_next_indices.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_find_next_adjcnt_index.lo nccf_find_next_adjcnt_index.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_find_next_adjcnt_index.c -fPIC -DPIC -o .libs/nccf_find_next_adjcnt_index.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_find_next_adjacent.lo nccf_find_next_adjacent.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_find_next_adjacent.c -fPIC -DPIC -o .libs/nccf_find_next_adjacent.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_find_indices.lo nccf_find_indices.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_find_indices.c -fPIC -DPIC -o .libs/nccf_find_indices.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_add_id_to_files.lo nccf_add_id_to_files.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_add_id_to_files.c -fPIC -DPIC -o .libs/nccf_add_id_to_files.o /bin/sh ../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_keyvalue.lo nccf_keyvalue.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I.. -I../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_keyvalue.c -fPIC -DPIC -o .libs/nccf_keyvalue.o nccf_keyvalue.c: In function 'nccf_kv_add': nccf_keyvalue.c:102:14: warning: 'values' may be used uninitialized in this function [-Wmaybe-uninitialized] kv2->val = values; ~~~~~~~~~^~~~~~~~ /bin/sh ../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -version-info 0:0:0 -L/usr/lib/openmpi/lib -o libcf_src.la -rpath /usr/lib/openmpi/lib nccoord.lo cffiles.lo cfvars.lo cfcvars.lo cfsubsets.lo cferror.lo cdTimeConv.lo timeArith.lo timeConv.lo libcfAddOn.lo cflistitem.lo nccf_varObj.lo nccf_strerror.lo nccf_solve.lo nccf_put_var_slice_text.lo nccf_linesearch_indices.lo nccf_linear_interp.lo nccf_index_to_corner_vector.lo nccf_index2vector.lo nccf_handle_error.lo nccf_get_tripolar_halfgrid.lo nccf_get_tripolar_grid.lo nccf_get_start_end_bound_indices.lo nccf_get_position.lo nccf_get_multi_index.lo nccf_get_linear_weights.lo nccf_get_flat_index.lo nccf_get_cubedsphere_grid.lo nccf_get_bipolar_cap.lo nccf_generate_id.lo nccf_find_next_indices.lo nccf_find_next_adjcnt_index.lo nccf_find_next_adjacent.lo nccf_find_indices.lo nccf_add_id_to_files.lo nccf_keyvalue.lo -lnetcdf -lcurl -lz -lmpi -llapack -lopenblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. -lmpi -llapack -lopenblas -lgfortran -lm -lquadmath -luuid libtool: link: i586-alt-linux-gcc -shared -fPIC -DPIC .libs/nccoord.o .libs/cffiles.o .libs/cfvars.o .libs/cfcvars.o .libs/cfsubsets.o .libs/cferror.o .libs/cdTimeConv.o .libs/timeArith.o .libs/timeConv.o .libs/libcfAddOn.o .libs/cflistitem.o .libs/nccf_varObj.o .libs/nccf_strerror.o .libs/nccf_solve.o .libs/nccf_put_var_slice_text.o .libs/nccf_linesearch_indices.o .libs/nccf_linear_interp.o .libs/nccf_index_to_corner_vector.o .libs/nccf_index2vector.o .libs/nccf_handle_error.o .libs/nccf_get_tripolar_halfgrid.o .libs/nccf_get_tripolar_grid.o .libs/nccf_get_start_end_bound_indices.o .libs/nccf_get_position.o .libs/nccf_get_multi_index.o .libs/nccf_get_linear_weights.o .libs/nccf_get_flat_index.o .libs/nccf_get_cubedsphere_grid.o .libs/nccf_get_bipolar_cap.o .libs/nccf_generate_id.o .libs/nccf_find_next_indices.o .libs/nccf_find_next_adjcnt_index.o .libs/nccf_find_next_adjacent.o .libs/nccf_find_indices.o .libs/nccf_add_id_to_files.o .libs/nccf_keyvalue.o -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -lnetcdf -lcurl -lz -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. /usr/lib/openmpi/lib/libmpi.so -llapack -lopenblas -lgfortran -lm -lquadmath -luuid -O2 -march=i586 -mtune=generic -pthread -Wl,-soname -Wl,libcf_src.so.0 -o .libs/libcf_src.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcf_src.so.0" && ln -s "libcf_src.so.0.0.0" "libcf_src.so.0") libtool: link: (cd ".libs" && rm -f "libcf_src.so" && ln -s "libcf_src.so.0.0.0" "libcf_src.so") libtool: link: ( cd ".libs" && rm -f "libcf_src.la" && ln -s "../libcf_src.la" "libcf_src.la" ) make[2]: Leaving directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/src' Making all in gridspec_api make[2]: Entering directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/gridspec_api' Making all in global make[3]: Entering directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/gridspec_api/global' /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_def_global.lo nccf_def_global.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_def_global.c -fPIC -DPIC -o .libs/nccf_def_global.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_def_global_from_file.lo nccf_def_global_from_file.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_def_global_from_file.c -fPIC -DPIC -o .libs/nccf_def_global_from_file.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_free_global.lo nccf_free_global.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_free_global.c -fPIC -DPIC -o .libs/nccf_free_global.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_put_global.lo nccf_put_global.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_put_global.c -fPIC -DPIC -o .libs/nccf_put_global.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_add_global_att.lo nccf_add_global_att.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_add_global_att.c -fPIC -DPIC -o .libs/nccf_add_global_att.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_global_att.lo nccf_inq_global_att.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_global_att.c -fPIC -DPIC -o .libs/nccf_inq_global_att.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_global_natts.lo nccf_inq_global_natts.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_global_natts.c -fPIC -DPIC -o .libs/nccf_inq_global_natts.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_global_attval.lo nccf_inq_global_attval.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_global_attval.c -fPIC -DPIC -o .libs/nccf_inq_global_attval.o /bin/sh ../../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -L/usr/lib/openmpi/lib -o libnccf_global.la nccf_def_global.lo nccf_def_global_from_file.lo nccf_free_global.lo nccf_put_global.lo nccf_add_global_att.lo nccf_inq_global_att.lo nccf_inq_global_natts.lo nccf_inq_global_attval.lo -lnetcdf -lcurl -lz -lmpi -llapack -lopenblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. -lmpi -llapack -lopenblas -lgfortran -lm -lquadmath -luuid libtool: link: ar cru .libs/libnccf_global.a .libs/nccf_def_global.o .libs/nccf_def_global_from_file.o .libs/nccf_free_global.o .libs/nccf_put_global.o .libs/nccf_add_global_att.o .libs/nccf_inq_global_att.o .libs/nccf_inq_global_natts.o .libs/nccf_inq_global_attval.o libtool: link: ranlib .libs/libnccf_global.a libtool: link: ( cd ".libs" && rm -f "libnccf_global.la" && ln -s "../libnccf_global.la" "libnccf_global.la" ) make[3]: Leaving directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/gridspec_api/global' Making all in axis make[3]: Entering directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/gridspec_api/axis' /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_def_axis.lo nccf_def_axis.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_def_axis.c -fPIC -DPIC -o .libs/nccf_def_axis.o nccf_def_axis.c: In function 'nccf_def_axis': nccf_def_axis.c:91:12: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (axis && strcmp(axis, "X") == 0 || strcmp(axis, "Y") == 0 || ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_put_axis.lo nccf_put_axis.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_put_axis.c -fPIC -DPIC -o .libs/nccf_put_axis.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_free_axis.lo nccf_free_axis.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_free_axis.c -fPIC -DPIC -o .libs/nccf_free_axis.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_def_axis_from_file.lo nccf_def_axis_from_file.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_def_axis_from_file.c -fPIC -DPIC -o .libs/nccf_def_axis_from_file.o nccf_def_axis_from_file.c: In function 'nccf_def_axis_from_file': nccf_def_axis_from_file.c:46:7: warning: unused variable 'cdm_axis_type' [-Wunused-variable] int cdm_axis_type = NCCF_NOAXISTYPE; ^~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_axis_len.lo nccf_inq_axis_len.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_axis_len.c -fPIC -DPIC -o .libs/nccf_inq_axis_len.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_add_axis_att.lo nccf_add_axis_att.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_add_axis_att.c -fPIC -DPIC -o .libs/nccf_add_axis_att.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_axis_datatype.lo nccf_inq_axis_datatype.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_axis_datatype.c -fPIC -DPIC -o .libs/nccf_inq_axis_datatype.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_axis_name.lo nccf_inq_axis_name.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_axis_name.c -fPIC -DPIC -o .libs/nccf_inq_axis_name.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_axis_datapointer.lo nccf_get_axis_datapointer.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../src -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_axis_datapointer.c -fPIC -DPIC -o .libs/nccf_get_axis_datapointer.o /bin/sh ../../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -L/usr/lib/openmpi/lib -o libnccf_axis.la nccf_def_axis.lo nccf_put_axis.lo nccf_free_axis.lo nccf_def_axis_from_file.lo nccf_inq_axis_len.lo nccf_add_axis_att.lo nccf_inq_axis_datatype.lo nccf_inq_axis_name.lo nccf_get_axis_datapointer.lo -lnetcdf -lcurl -lz -lmpi -llapack -lopenblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. -lmpi -llapack -lopenblas -lgfortran -lm -lquadmath -luuid libtool: link: ar cru .libs/libnccf_axis.a .libs/nccf_def_axis.o .libs/nccf_put_axis.o .libs/nccf_free_axis.o .libs/nccf_def_axis_from_file.o .libs/nccf_inq_axis_len.o .libs/nccf_add_axis_att.o .libs/nccf_inq_axis_datatype.o .libs/nccf_inq_axis_name.o .libs/nccf_get_axis_datapointer.o libtool: link: ranlib .libs/libnccf_axis.a libtool: link: ( cd ".libs" && rm -f "libnccf_axis.la" && ln -s "../libnccf_axis.la" "libnccf_axis.la" ) make[3]: Leaving directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/gridspec_api/axis' Making all in coord make[3]: Entering directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/gridspec_api/coord' /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_def_coord.lo nccf_def_coord.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_def_coord.c -fPIC -DPIC -o .libs/nccf_def_coord.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_put_coord.lo nccf_put_coord.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_put_coord.c -fPIC -DPIC -o .libs/nccf_put_coord.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_free_coord.lo nccf_free_coord.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_free_coord.c -fPIC -DPIC -o .libs/nccf_free_coord.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_add_coord_att.lo nccf_add_coord_att.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_add_coord_att.c -fPIC -DPIC -o .libs/nccf_add_coord_att.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_coord_bound.lo nccf_inq_coord_bound.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_coord_bound.c -fPIC -DPIC -o .libs/nccf_inq_coord_bound.o nccf_inq_coord_bound.c: In function 'nccf_inq_coord_bound': nccf_inq_coord_bound.c:25:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] int ndims, status; ^~~~~~ /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_coord_bound_slice.lo nccf_inq_coord_bound_slice.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_coord_bound_slice.c -fPIC -DPIC -o .libs/nccf_inq_coord_bound_slice.o nccf_inq_coord_bound_slice.c: In function 'nccf_inq_coord_bound_slice': nccf_inq_coord_bound_slice.c:30:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] int ndims, i, status; ^~~~~~ /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_get_coord_data_pointer.lo nccf_get_coord_data_pointer.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_get_coord_data_pointer.c -fPIC -DPIC -o .libs/nccf_get_coord_data_pointer.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_coord_ndims.lo nccf_inq_coord_ndims.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_coord_ndims.c -fPIC -DPIC -o .libs/nccf_inq_coord_ndims.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_coord_name.lo nccf_inq_coord_name.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_coord_name.c -fPIC -DPIC -o .libs/nccf_inq_coord_name.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_coord_units.lo nccf_inq_coord_units.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_coord_units.c -fPIC -DPIC -o .libs/nccf_inq_coord_units.o nccf_inq_coord_units.c: In function 'nccf_inq_coord_units': nccf_inq_coord_units.c:23:59: warning: passing argument 3 of 'nccf_varGetAttribPtr' from incompatible pointer type [-Wincompatible-pointer-types] nccf_varGetAttribPtr(&self->coordVar, CF_ATTNAME_UNITS, &units_attr); ^ In file included from nccf_coord.h:13:0, from nccf_inq_coord_units.c:5: ../../include/nccf_varObj.h:159:5: note: expected 'const void **' but argument is of type 'char **' int nccf_varGetAttribPtr(struct nccf_var_obj **handle, ^~~~~~~~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_def_coord_from_file.lo nccf_def_coord_from_file.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_def_coord_from_file.c -fPIC -DPIC -o .libs/nccf_def_coord_from_file.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_coord_dims.lo nccf_inq_coord_dims.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_coord_dims.c -fPIC -DPIC -o .libs/nccf_inq_coord_dims.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_inq_coord_dimnames.lo nccf_inq_coord_dimnames.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_inq_coord_dimnames.c -fPIC -DPIC -o .libs/nccf_inq_coord_dimnames.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_is_coord.lo nccf_is_coord.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_is_coord.c -fPIC -DPIC -o .libs/nccf_is_coord.o /bin/sh ../../libtool --tag=CC --mode=compile i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o nccf_def_coord_from_axes.lo nccf_def_coord_from_axes.c libtool: compile: i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c nccf_def_coord_from_axes.c -fPIC -DPIC -o .libs/nccf_def_coord_from_axes.o nccf_def_coord_from_axes.c: In function 'nccf_def_coord_from_axes': nccf_def_coord_from_axes.c:93:40: warning: passing argument 3 of 'nccf_def_coord' from incompatible pointer type [-Wincompatible-pointer-types] status = nccf_def_coord(ndims, dims, dimnames, data, save, ^~~~~~~~ In file included from nccf_def_coord_from_axes.c:7:0: nccf_coord.h:55:5: note: expected 'const char **' but argument is of type 'char **' int nccf_def_coord(int ndims, const int *dims, const char **dimnames, ^~~~~~~~~~~~~~ /bin/sh ../../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -L/usr/lib/openmpi/lib -o libnccf_coord.la nccf_def_coord.lo nccf_put_coord.lo nccf_free_coord.lo nccf_add_coord_att.lo nccf_inq_coord_bound.lo nccf_inq_coord_bound_slice.lo nccf_get_coord_data_pointer.lo nccf_inq_coord_ndims.lo nccf_inq_coord_name.lo nccf_inq_coord_units.lo nccf_def_coord_from_file.lo nccf_inq_coord_dims.lo nccf_inq_coord_dimnames.lo nccf_is_coord.lo nccf_def_coord_from_axes.lo -lnetcdf -lcurl -lz -lmpi -llapack -lopenblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. -lmpi -llapack -lopenblas -lgfortran -lm -lquadmath -luuid libtool: link: ar cru .libs/libnccf_coord.a .libs/nccf_def_coord.o .libs/nccf_put_coord.o .libs/nccf_free_coord.o .libs/nccf_add_coord_att.o .libs/nccf_inq_coord_bound.o .libs/nccf_inq_coord_bound_slice.o .libs/nccf_get_coord_data_pointer.o .libs/nccf_inq_coord_ndims.o .libs/nccf_inq_coord_name.o .libs/nccf_inq_coord_units.o .libs/nccf_def_coord_from_file.o .libs/nccf_inq_coord_dims.o .libs/nccf_inq_coord_dimnames.o .libs/nccf_is_coord.o .libs/nccf_def_coord_from_axes.o libtool: link: ranlib .libs/libnccf_coord.a libtool: link: ( cd ".libs" && rm -f "libnccf_coord.la" && ln -s "../libnccf_coord.la" "libnccf_coord.la" ) i586-alt-linux-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../../include -I../../gridspec_api/axis -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -c -o tst_1d_boundary_slice.o tst_1d_boundary_slice.c tst_1d_boundary_slice.c: In function 'main': tst_1d_boundary_slice.c:24:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] int save = 1, status; ^~~~~~ /bin/sh ../../libtool --tag=CC --mode=link i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -L/usr/lib/openmpi/lib -o tst_1d_boundary_slice tst_1d_boundary_slice.o libnccf_coord.la ../axis/libnccf_axis.la ../global/libnccf_global.la ../../src/libcf_src.la -lnetcdf -lnetcdf -lcurl -lz -lmpi -llapack -lopenblas -L/usr/lib/openmpi/lib -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. -lmpi -llapack -lopenblas -lgfortran -lm -lquadmath -luuid libtool: link: i586-alt-linux-gcc -pipe -Wall -g -O2 -march=i586 -mtune=generic -I/usr/include -I/usr/lib/openmpi/include/netcdf-3 -I/usr/lib/openmpi/include -o .libs/tst_1d_boundary_slice tst_1d_boundary_slice.o -L/usr/lib/openmpi/lib ./.libs/libnccf_coord.a -L/usr/lib/gcc/i586-alt-linux/6 -L/usr/lib/gcc/i586-alt-linux/6/../../.. ../axis/.libs/libnccf_axis.a ../global/.libs/libnccf_global.a /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -ldl -lnuma -lrt -lutil ../../src/.libs/libcf_src.so -lnetcdf -lcurl -lz /usr/lib/openmpi/lib/libmpi.so -llapack -lopenblas -lgfortran -lm -lquadmath -luuid -pthread -Wl,-rpath -Wl,/usr/lib/openmpi/lib /usr/bin/ld: cannot find -lnuma collect2: error: ld returned 1 exit status make[3]: *** [tst_1d_boundary_slice] Error 1 make[3]: Leaving directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/gridspec_api/coord' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/usr/src/RPM/BUILD/libcf-mpi-1.0/gridspec_api' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/usr/src/RPM/BUILD/libcf-mpi-1.0' make: *** [all] Error 2 make: Leaving directory `/usr/src/RPM/BUILD/libcf-mpi-1.0' error: Bad exit status from /usr/src/tmp/rpm-tmp.68994 (%build) RPM build errors: Unknown option ? in add_optflags(a:f:t:p:w:W:d:g:O:A:C:D:E:H:i:M:n:P:U:u:l:s:X:B:I:L:b:V:m:x:c:S:E:o:v:) Bad exit status from /usr/src/tmp/rpm-tmp.68994 (%build) Command exited with non-zero status 1 33.97user 7.60system 0:47.24elapsed 87%CPU (0avgtext+0avgdata 29016maxresident)k 0inputs+0outputs (0major+1158951minor)pagefaults 0swaps hsh-rebuild: rebuild of `libcf-mpi-1.0-alt1.beta1.2011092223.src.rpm' failed. Command exited with non-zero status 1 65.05user 15.71system 1:31.02elapsed 88%CPU (0avgtext+0avgdata 134136maxresident)k 15864inputs+0outputs (0major+1593318minor)pagefaults 0swaps